Option 1 Clinical grade |
Option 2 Cost effectiveness |
Option 3 Comprehensive |
Option 4 Mouse samples |
|
---|---|---|---|---|
Probes | IDT: xGEN Exome Hybridization Panel | Agilent SureSelect All Exon V6 | Agilent SureSelect All Exon V8 Twist Exome 2.0 |
Agilent SureSelect XT Mouse |
Target size | 39M | 60M | Agilent V8: 35.1M Twist 2.0: 36.5M |
49.6M |
Database coverage |
RefSeq | CCDS, RefSeq, GENCODE | Agilent v8: CCDS, RefSeq, GENCODE Twist 2.0: CCDS, RefSeq, GENCODE, Clinvar, HCMG, Ensembl |
Ensembl, RefSeq |
Sample types |
gDNA from blood Saliva Cell lines/ Pellets |
gDNA from blood Saliva Cell lines/ Pellets FFPE Other tissues cfDNA/ ctDNA |
gDNA from blood Saliva Cell lines/ Pellets |
gDNA from mouse |
TAT* | within 2 weeks | within 4 weeks | 6-7 weeks | within 5 weeks |
Price | +++ | ++ | +++ | +++ |
Notable features |
- Sequencing performed in CAP laboratories. - The xGEN hybridization panel can capture and provide appropriate representation of samples with high GC and AT contents. - Fast turnaround time. |
- Suitable for different types of samples and vast variety of research. - Well established exome enrichment probe. |
- Comprehensive and the most up-to-date coverage of protein coding regions. Agilent V8: - Ability to cover the TERT promoter region and other hard-to-capture exons, as well as having a better uniformity of its coverage distribution. Twist 2.0: - Offers clinically relevant panels such as Clinvar, alongside other genomic databases for translational research. |
- Based on the current UCSC mm9 mouse genome and has a full coverage of the mouse exome by capturing 221,784 exons and 24,306 genes. |